PDBx/mmCIF
A Member of the wwPDB

Data Category pdbx_modification_feature

Browse:

General

Category name
pdbx_modification_feature
Required in PDB entries
no
Category group membership
struct_group
Used in current PDB entries
Yes, in about 35.0 % of entries

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories
70
View abbreviated category relationship diagram including only those categories used in current PDB entries.

Category Description 

               Data items in the PDBX_MODIFICATION_FEATURE category provides 
               information about all the protein modifications that have been 
               modeled in the entry.

Category Examples

2

View/hide Category Examples

Category Example1

View/Hide Category Example 
 
    loop_
    _pdbx_modification_feature.ordinal
    _pdbx_modification_feature.label_comp_id
    _pdbx_modification_feature.label_asym_id
    _pdbx_modification_feature.label_seq_id
    _pdbx_modification_feature.label_alt_id
    _pdbx_modification_feature.modified_residue_label_comp_id
    _pdbx_modification_feature.modified_residue_label_asym_id
    _pdbx_modification_feature.modified_residue_label_seq_id
    _pdbx_modification_feature.modified_residue_label_alt_id
    _pdbx_modification_feature.auth_comp_id
    _pdbx_modification_feature.auth_asym_id
    _pdbx_modification_feature.auth_seq_id
    _pdbx_modification_feature.PDB_ins_code
    _pdbx_modification_feature.symmetry
    _pdbx_modification_feature.modified_residue_auth_comp_id
    _pdbx_modification_feature.modified_residue_auth_asym_id
    _pdbx_modification_feature.modified_residue_auth_seq_id
    _pdbx_modification_feature.modified_residue_PDB_ins_code
    _pdbx_modification_feature.modified_residue_symmetry
    _pdbx_modification_feature.comp_id_linking_atom
    _pdbx_modification_feature.modified_residue_id_linking_atom
    _pdbx_modification_feature.modified_residue_id
    _pdbx_modification_feature.ref_pcm_id
    _pdbx_modification_feature.ref_comp_id
    _pdbx_modification_feature.type
    _pdbx_modification_feature.category
    1 SEP A 65 ? .   . .  . SEP A 65 ? 1_555 .   . .  . .     .  .  SER 1 SEP Phosphorylation 'Named protein modification'
    2 SEP B 65 ? .   . .  . SEP B 65 ? 1_555 .   . .  . .     .  .  SER 1 SEP Phosphorylation 'Named protein modification'
    3 CYS A 46 ? CYS B 46 ? CYS A 46 ? 1_555 CYS B 46 ? 1_555 SG SG .   . .   None            'Disulfide bridge'

Category Example2

View/Hide Category Example 
 
    loop_
    _pdbx_modification_feature.ordinal
    _pdbx_modification_feature.label_comp_id
    _pdbx_modification_feature.label_asym_id
    _pdbx_modification_feature.label_seq_id
    _pdbx_modification_feature.label_alt_id
    _pdbx_modification_feature.modified_residue_label_comp_id
    _pdbx_modification_feature.modified_residue_label_asym_id
    _pdbx_modification_feature.modified_residue_label_seq_id
    _pdbx_modification_feature.modified_residue_label_alt_id
    _pdbx_modification_feature.auth_comp_id
    _pdbx_modification_feature.auth_asym_id
    _pdbx_modification_feature.auth_seq_id
    _pdbx_modification_feature.PDB_ins_code
    _pdbx_modification_feature.symmetry
    _pdbx_modification_feature.modified_residue_auth_comp_id
    _pdbx_modification_feature.modified_residue_auth_asym_id
    _pdbx_modification_feature.modified_residue_auth_seq_id
    _pdbx_modification_feature.modified_residue_PDB_ins_code
    _pdbx_modification_feature.modified_residue_symmetry
    _pdbx_modification_feature.comp_id_linking_atom
    _pdbx_modification_feature.modified_residue_id_linking_atom
    _pdbx_modification_feature.modified_residue_id
    _pdbx_modification_feature.ref_pcm_id
    _pdbx_modification_feature.ref_comp_id
    _pdbx_modification_feature.type
    _pdbx_modification_feature.category
    1 CSO C 32 ? .   . .  . CSO C 32   ? 1_555 .   . .  . .     .  .  CYS 1 CSO Hydroxylation  'Named protein modification'
    2 CSO D 32 ? .   . .  . CSO D 32   ? 1_555 .   . .  . .     .  .  CYS 1 CSO Hydroxylation  'Named protein modification'
    3 PLM E .  ? CYS A 82 ? PLM A 1068 ? 1_555 CYS A 68 ? 1_555 C1 SG CYS 6 PLM Palmitoylation Lipid/lipid-like
    4 PLM F .  ? CYS B 82 ? PLM B 1068 ? 1_555 CYS B 68 ? 1_555 C1 SG CYS 6 PLM Palmitoylation Lipid/lipid-like

Key Data Items

Category Data Items

View/hide item list