Data Category ma_protocol_step
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General 
- Category name
- ma_protocol_step
- Required in PDB entries
- yes
- Category group membership
- ma_group
- Used in current PDB entries
- No
Category Relationship Diagrams 
View full category relationship diagram including all dictionary data categories
Category Description
Data items in the MA_PROTOCOL_STEP category captures the
details of the modeling protocol and individial steps
within each protocol.
Category Example1
loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 "template search" . 2 1 5 2 1 2 "template search" . 2 2 6 3 1 3 "template search" . 2 3 7 4 1 4 "template search" . 2 4 8 5 2 1 "template selection" . 2 5 9 6 2 2 "template selection" . 2 6 10 7 2 3 "template selection" . 2 7 11 8 2 4 "template selection" . 2 8 12 9 3 1 "modeling" . 2 13 14 10 4 1 "model selection" . 2 14 15 # ... abbreviated ... #
Category Example2
loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'coevolution MSA' 'MSA generated with MMseqs2' 1 1 3 2 1 2 modeling 'Model generated using AlphaFold2 producing 5 models without model relaxation, ranked by pLDDT' 2 2 4 3 1 3 'model refinement' 'Model was minimized and subjected to molecular dynamics for 1 ns using GROMACS' 3 4 5
