Data Category array_structure_list
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General 
- Category name
- array_structure_list
- Required in PDB entries
- no
- Category group membership
- array_data_group
- Used in current PDB entries
- No
Category Relationship Diagrams 
View full category relationship diagram including all dictionary data categories
Category Description
Data items in the ARRAY_STRUCTURE_LIST category record the size
and organization of each array dimension.
The relationship to physical axes may be given.
NeXus Mapping Details
_array_structure_list.axis_set_id AXISSETID
_array_structure_list.array_id ARRAYID
_array_structure_list.array_section_id ARRAYSECTIONID
_array_structure_list.dimension DIM
_array_structure_list.direction DIR
_array_structure_list.index INDEX
_array_structure_list.precedence PRECEDENCE
_array_structure_list_section.array_id ARRAYID -->
_array_structure_list_section.id ARRAYSECTIONID -->
_array_structure_list_section.index PRECEDENCE-->
_array_structure_list_section.end END -->
_array_structure_list_section.start START -->
_array_structure_list_section.stride STRIDE -->
loop_
_array_structure_list_axis.axis_id
_array_structure_list_axis.axis_set_id
_array_structure_list_axis.angle
_array_structure_list_axis.angle_increment
_array_structure_list_axis.displacement
_array_structure_list_axis.fract_displacement
_array_structure_list_axis.displacement_increment
_array_structure_list_axis.fract_displacement_increment
_array_structure_list_axis.angular_pitch
_array_structure_list_axis.reference_angle
_array_structure_list_axis.reference_displacement REFDISP
AXISID1 AXISSETID ANGLE1 ANGLEINC1 DISP1 FRACTDISP1
DISPINC1 FRACTINC1 ANGPITCH1 REFANG1
AXISID2 AXISSETID ANGLE2 ANGLEINC2 DISP2 FRACTDISP2
DISPINC2 FRACTINC2 ANGPITCH2 REFANG2
AXISID3 AXISSETID ANGLE3 ANGLEINC3 DISP3 FRACTDISP3
DISPINC3 FRACTINC3 ANGPITCH3 REFANG3
_diffrn_data_frame.array_id ARRAYID
_diffrn_data_frame.binary_id BINARYID
_diffrn_data_frame.center_fast CENF
_diffrn_data_frame.center_slow CENS
_diffrn_data_frame.center_derived CENDERIVED
_diffrn_data_frame.center_units UNITS
_diffrn_data_frame.detector_element_id ELEMENTID
_diffrn_data_frame.id FRAMEID
_diffrn_data_frame.details DETAILS
-->
...
/entry:NXentry
/data_ARRAYID_BINARYID:NXdata
@signal="data_ARRAYID_BINARY_ID"
/data_ARRAYID_BINARYID[ the data for the array ARRAYID,
binary BINARYID, all sections,
all FRAMES]
@axes=[...,AXISID1,...] with AXISID1 inserted at PRECEDENCE-1
@AXISID1_indices=[PRECEDENCE-1]
@AXISID2_indices=[PRECEDENCE-1]
@AXISID3_indices=[PRECEDENCE-1]
@AXISID1_origins=[origin1] (default 0)
@AXISID2_origins=[origin2] (default 0)
@AXISID3_origins=[origin3] (default 0)
@AXISID1_sizes=[size1]
@AXISID2_sizes=[size2]
@AXISID3_sizes=[size3]
@AXISID1_strides=[stride1]
@AXISID2_strides=[stride2]
@AXISID3_strides=[stride3]
...
/AXISID1 -->
/entry/instrument/DETECTORELEMENTNAME/transformations/AXISID1
/AXISID2 -->
/entry/instrument/DETECTORELEMENTNAME/transformations/AXISID2
/AXISID2 -->
/entry/instrument/DETECTORELEMENTNAME/transformations/AXISID3
...
/instrument:NXinstrument
/DETECTORNAME:NXdetector_group
/DETECTORELEMENTNAME:NXdetector
/data_ARRAYID_BINARYID -->
/entry/data_ARRAYID_BINARYID/data_ARRAYID_BINARYID
/AXISID1 -->
/entry/instrument/DETECTORELEMENTNAME/transformations/AXISID1
/AXISID2 -->
/entry/instrument/DETECTORELEMENTNAME/transformations/AXISID2
/AXISID2 -->
/entry/instrument/DETECTORELEMENTNAME/transformations/AXISID3
/ARRAYSECTIONID:NXdetector_module
/data_origin=[...] -- the 0-based origins indices of ARRAYSECTIONID
/data_size=[...] the sizes in pixels of ARRAYSECTIONID
/data_stride[...] the strides of ARRAYSECTIONID
..
/transformations:NXtransformations
/AXISID1=[DISP1,DISP1+DISPINC1,...]
(or using angles where appropriate)
@depends_on=... determined from AXIS definitions
@equipment="detector"
@offset=[...] determined from AXIS definitions
@offset_units="mm"
@transformation_type="..." from AXIS definitions
@units="mm"
@vector=[...] determined from AXIS definitions
@CBF_array_structure_list_axis__axis_id="AXISID1"
@CBF_array_structure_list_axis__axis_set_id="AXISSETID"
@CBF_array_structure_list_axis__angle=ANGLE1
@CBF_array_structure_list_axis__angle_increment=ANGLEINC1
@CBF_array_structure_list_axis__displacement=DISP1
@CBF_array_structure_list_axis__displacement=FRACTDISP1
@CBF_array_structure_list_axis__displacement_increment=DISPINC1
@CBF_array_structure_list_axis__fract_displacement_increment
=FRACTINC1
@CBF_array_structure_list_axis__angular_pitch=ANGPITCH1
@CBF_array_structure_list_axis__radial_pitch=RADPITCH1
@CBF_array_structure_list_axis__reference_angle=REFANG1
@CBF_array_structure_list_axis__reference_displacement=REFDISP1
/AXISID2=[DISP2,DISP2+DISPINC2,...]
(or using angles where appropriate)
@depends_on=... determined from AXIS definitions
@equipment="detector"
@offset=[...] determined from AXIS definitions
@offset_units="mm"
@transformation_type="..." from AXIS definitions
@units="mm"
@vector=[...] determined from AXIS definitions
@CBF_array_structure_list_axis__axis_id="AXISID2"
@CBF_array_structure_list_axis__axis_set_id="AXISSETID"
@CBF_array_structure_list_axis__angle=ANGLE2
@CBF_array_structure_list_axis__angle_increment=ANGLEINC2
@CBF_array_structure_list_axis__displacement=DISP2
@CBF_array_structure_list_axis__displacement=FRACTDISP2
@CBF_array_structure_list_axis__displacement_increment=DISPINC2
@CBF_array_structure_list_axis__fract_displacement_increment
=FRACTINC2
@CBF_array_structure_list_axis__angular_pitch=ANGPITCH2
@CBF_array_structure_list_axis__radial_pitch=RADPITCH2
@CBF_array_structure_list_axis__reference_angle=REFANG2
@CBF_array_structure_list_axis__reference_displacement=REFDISP2
/AXISID3=[DISP3,DISP3+DISPINC3,...]
(or using angles where appropriate)
@depends_on=... determined from AXIS definitions
@equipment="detector"
@offset=[...] determined from AXIS definitions
@offset_units="mm"
@transformation_type="..." from AXIS definitions
@units="mm"
@vector=[...] determined from AXIS definitions
@CBF_array_structure_list_axis__axis_id="AXISID3"
@CBF_array_structure_list_axis__axis_set_id="AXISSETID"
@CBF_array_structure_list_axis__angle=ANGLE3
@CBF_array_structure_list_axis__angle_increment=ANGLEINC3
@CBF_array_structure_list_axis__displacement=DISP3
@CBF_array_structure_list_axis__displacement=FRACTDISP3
@CBF_array_structure_list_axis__displacement_increment=DISPINC3
@CBF_array_structure_list_axis__fract_displacement_increment
=FRACTINC3
@CBF_array_structure_list_axis__angular_pitch=ANGPITCH3
@CBF_array_structure_list_axis__radial_pitch=RADPITCH3
@CBF_array_structure_list_axis__reference_angle=REFANG3
@CBF_array_structure_list_axis__reference_displacement=REFDISP3
Notes: The same axis AXISIDn may appear in multiple axis sets for different
values of PRECEDENCE of the data array, in which case the values
in AXISIDn_indices will be the sorted list of PRECEDENCE-1 values
and the array section information will be organized by the
same ordering.
Category Example
loop_
_array_structure_list.array_id
_array_structure_list.index
_array_structure_list.dimension
_array_structure_list.precedence
_array_structure_list.direction
_array_structure_list.axis_set_id
image_1 1 1300 1 increasing ELEMENT_X
image_1 2 1200 2 decreasing ELEMENY_Y
