Data Item _struct_ref.seq_align

General

Item name
_struct_ref.seq_align
Category name
struct_ref
Attribute name
seq_align
Required in PDB entries
no
Used in currrent PDB entries
No

Item Description

A flag to indicate the scope of the alignment between the sequence of the entity or biological unit described in the data block and that in the referenced database entry. 'entire' indicates that alignment spans the entire length of both sequences (although point differences may occur and can be annotated using the data items in the STRUCT_REF_SEQ_DIF category). 'partial' indicates a partial alignment. The region (or regions) of the alignment may be delimited using data items in the STRUCT_REF_SEQ category. This data item may also take the value '.', indicating that the reference is not to a sequence.

Data Type

Data type code
ucode
Data type detail
code item types/single words (case insensitive) ...
Primitive data type code
uchar
Regular expression
[_,.;:"&<>()/\{}'`~!@#$%A-Za-z0-9*|+-]*

Controlled Vocabulary

Allowed Value Details
complete alignment is complete
partial alignment is partial

Controlled Vocabulary at Deposition

Allowed Value Details
complete alignment is complete
partial alignment is partial